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1

A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes

Richard M. Neve, Koei Chin, Jane Fridlyand, Jennifer Yeh, Frederick L. Baehner, Tea Fevr, Laura Clark, Nora Bayani, Jean-Philippe Coppe, Frances Tong, Terry Speed, Paul T. Spellman, Sandy DeVries, Ann

Journal:

Year:

2006

Language:

english

File:

PDF, 2.81 MB

english, 2006

2

Cluster Analysis and Display of Genome-Wide Expression Patterns

Michael B. Eisen, Paul T. Spellman, Patrick O. Brown and David Botstein

Journal:

Proceedings of the National Academy of Sciences

Year:

1998

Language:

english

File:

PDF, 2.14 MB

english, 1998

3

Stacked Predictive Sparse Decomposition for Classification of Histology Sections

Chang, Hang, Zhou, Yin, Borowsky, Alexander, Barner, Kenneth, Spellman, Paul, Parvin, Bahram

Journal:

International Journal of Computer Vision

Year:

2015

Language:

english

File:

PDF, 3.80 MB

english, 2015

4

The Effects of Post-Traumatic Stress Disorder on Children's Social Skills and Occupation of Play

Kjorstad, Mari, O'hare, Sara, Soseman, Kathleen, Spellman, Colleen, Thomas, Paule

Journal:

Occupational Therapy in Mental Health

Year:

2005

Language:

english

File:

PDF, 782 KB

english, 2005

5

Systematic variation in gene expression patterns in human cancer cell lines

Ross, Douglas T., Scherf, Uwe, Eisen, Michael B., Perou, Charles M., Rees, Christian, Spellman, Paul, Iyer, Vishwanath, Jeffrey, Stefanie S., Van de Rijn, Matt, Waltham, Mark

Journal:

Nature Genetics

Year:

2000

Language:

english

File:

PDF, 1.47 MB

english, 2000

6

Xenografts faithfully recapitulate breast cancer-specific gene expression patterns of parent primary breast tumors

Laura A. Petrillo, Denise M. Wolf, Ann M. Kapoun, Nicholas J. Wang, Andrea Barczak, Yuanyuan Xiao, Hasan Korkaya, Frederick Baehner, John Lewicki, Max Wicha, John W. Park, Paul T. Spellman, Joe W. Gra

Journal:

Breast Cancer Research and Treatment

Year:

2012

Language:

english

File:

PDF, 845 KB

english, 2012

7

A Diary of the Art Year in Ireland

Paul Spellman and Aisling Maguire

Journal:

Irish Arts Review Yearbook

Year:

2002

Language:

english

File:

PDF, 14.84 MB

english, 2002

8

Book Reviews

Zagorcheva, Dessie, Catellani, Nicola, Spellman, Kathryn, Luif, Paul, Ikonomopoulos, Konstantinos, Stetter, Stephan, Boutaleb, Assia, Knio, Karim, Hudgens, Fawn

Journal:

Mediterranean Politics

Year:

2007

Language:

english

File:

PDF, 148 KB

english, 2007

9

[IEEE 2013 IEEE 10th International Symposium on Biomedical Imaging (ISBI 2013) - San Francisco, CA, USA (2013.04.7-2013.04.11)] 2013 IEEE 10th International Symposium on Biomedical Imaging - Classification of tumor histopathology via sparse feature learning

Nayak, Nandita, Chang, Hang, Borowsky, Alexander, Spellman, Paul, Parvin, Bahram

Year:

2013

Language:

english

File:

PDF, 1.06 MB

english, 2013

10

Sentencing Decisions: Matching the Decisionmaker to the Decision Nature

Paul H. Robinson and Barbara A. Spellman

Journal:

Columbia Law Review

Year:

2005

Language:

english

File:

PDF, 4.92 MB

english, 2005

11

A Diary of the Art Year in Ireland

Paul Spellman and Margarita Cappock

Journal:

Irish Arts Review Yearbook

Year:

2000

Language:

english

File:

PDF, 16.32 MB

english, 2000

12

Heterogeneous distributions of CO 2 may be more important for dissolution and karstification in coastal eogenetic limestone than mixing dissolution

Gulley, Jason D., Martin, Jonathon B., Moore, Paul J., Brown, Amy, Spellman, Patricia D., Ezell, John

Journal:

Earth Surface Processes and Landforms

Year:

2015

Language:

english

File:

PDF, 2.76 MB

english, 2015

13

Chasing Thugs, Nazis, and Reds: Texas Ranger Norman K. Dixon by Kemp Dixon

Spellman, Paul N.

Journal:

Southwestern Historical Quarterly

Year:

2016

Language:

english

File:

PDF, 262 KB

english, 2016

14

A phase 1, randomized, placebo-controlled study to evaluate the safety and immunogenicity of an mRNA-based RSV prefusion F protein vaccine in healthy younger and older adults

Aliprantis, Antonios O., Shaw, Christine A., Griffin, Paul, Farinola, Nicholas, Railkar, Radha A., Cao, Xin, Liu, Wen, Sachs, Jeffrey R., Swenson, Christine J., Lee, Heather, Cox, Kara S., Spellman, D

Journal:

Human Vaccines & Immunotherapeutics

Year:

2020

File:

PDF, 6.21 MB

2020

15

Amplification of 11q13 in ovarian carcinoma

Lindsay A. Brown, Steve E. Kalloger, Melinda A. Miller, Ie-Ming Shih, Steven E. McKinney, Jennifer L. Santos, Ken Swenerton, Paul T. Spellman, Joe Gray, C. Blake Gilks, David G. Huntsman

Journal:

Genes, Chromosomes and Cancer

Year:

2008

Language:

english

File:

PDF, 359 KB

english, 2008

16

Morphometic analysis of TCGA glioblastoma multiforme

Hang Chang, Gerald V Fontenay, Ju Han, Ge Cong, Frederick L Baehner, Joe W Gray, Paul T Spellman, Bahram Parvin

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 2.35 MB

english, 2011

17

Evidence for large domains of similarly expressed genes in theDrosophilagenome

Paul T Spellman, Gerald M Rubin

Journal:

Journal of Biology

Year:

2002

Language:

english

File:

PDF, 978 KB

english, 2002

18

Should all diabetic patients receive statins?

Paul J. Garcia, Craig W. Spellman

Journal:

Current Atherosclerosis Reports

Year:

2006

Language:

english

File:

PDF, 104 KB

english, 2006

19

Spontaneous resolution of marked dilatation of cerebral duro-venous system in newborn presenting with fetal hydrops

Jayendra Sharma, Paul Toubas, Tzipporah Sklar, John Pole-Spellman

Journal:

Indian Journal of Pediatrics

Year:

2010

Language:

english

File:

PDF, 80 KB

english, 2010

20

The MAPKKK Mekk1 regulates the expression of Turandot stress genes in response to septic injury in Drosophila

Sylvain Brun, Sheila Vidal, Paul Spellman, Kuniaki Takahashi, Hervé Tricoire, Bruno Lemaitre

Journal:

Year:

2006

Language:

english

File:

PDF, 333 KB

english, 2006

21

Functional clustering of genes using microarray gene expression data

Spellman, Paul, Gasch, Audrey, Eisen, Michael, Kao, Camilla, Brown, Patrick, Botstein, David

Journal:

Nature Genetics

Year:

1999

Language:

english

File:

PDF, 113 KB

english, 1999

22

10.1038/35017581

Futcher, Bruce, Zhu, Gefeng, Spellman, Paul T., Volpe, Tom, Brown, Patrick O., Botstein, David, Davis, Trisha N.

Journal:

Year:

2000

Language:

english

File:

PDF, 346 KB

english, 2000

23

Top-down standards will not serve systems biology

Quackenbush, John, Stoeckert, Christian, Ball, Catherine, Brazma, Alvis, Gentleman, Robert, Huber, Wolfgang, Irizarry, Rafael, Salit, Marc, Sherlock, Gavin, Spellman, Paul

Journal:

Year:

2006

Language:

english

File:

PDF, 120 KB

english, 2006

24

10.1038/ng1201-365

Brazma, Alvis, Hingamp, Pascal, Quackenbush, John, Sherlock, Gavin, Spellman, Paul, Stoeckert, Chris, Aach, John, Ansorge, Wilhelm, Ball, Catherine A., Causton, Helen C., Gaasterland, Terry, Glenisson

Journal:

Nature Genetics

Year:

2001

Language:

english

File:

PDF, 527 KB

english, 2001

25

A new treasure in the breast cancer gene hunt

Spellman, Paul, Gray, Joe

Journal:

Nature Medicine

Year:

2011

Language:

english

File:

PDF, 595 KB

english, 2011

26

Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt

Durinck, Steffen, Spellman, Paul T, Birney, Ewan, Huber, Wolfgang

Journal:

Nature Protocols

Year:

2009

Language:

english

File:

PDF, 532 KB

english, 2009

27

Neuronal Protection from Cerebral Ischemia by Synthetic Fibronectin Peptides to Leukocyte Adhesion Molecules

Yanaka, Kiyoyuki, Camarata, Paul J., Spellman, Stephen R., McCarthy, James B., Furcht, Leo T., Low, Walter C., Heros, Roberto C.

Journal:

Journal of Cerebral Blood Flow and Metabolism

Year:

1996

Language:

english

File:

PDF, 418 KB

english, 1996

28

Laminin Peptide Ameliorates Brain Injury by Inhibiting Leukocyte Accumulation in a Rat Model of Transient Focal Cerebral Ischemia

Yanaka, Kiyoyuki, Camarata, Paul J., Spellman, Stephen R., Skubitz, Amy P. N., Furcht, Leo T., Low, Walter C.

Journal:

Journal of Cerebral Blood Flow and Metabolism

Year:

1997

Language:

english

File:

PDF, 405 KB

english, 1997

29

Genomic and transcriptional aberrations linked to breast cancer pathophysiologies

Koei Chin, Sandy DeVries, Jane Fridlyand, Paul T. Spellman, Ritu Roydasgupta, Wen-Lin Kuo, Anna Lapuk, Richard M. Neve, Zuwei Qian, Tom Ryder, Fanqing Chen, Heidi Feiler, Taku Tokuyasu, Chris Kingsley

Journal:

Year:

2006

Language:

english

File:

PDF, 1.42 MB

english, 2006

30

Reply: whole-culture synchronization – effective tools for cell cycle studies

Paul T Spellman, Gavin Sherlock

Journal:

Trends in Biotechnology

Year:

2004

Language:

english

File:

PDF, 323 KB

english, 2004

31

Final words: cell age and cell cycle are unlinked

Paul T Spellman, Gavin Sherlock

Journal:

Trends in Biotechnology

Year:

2004

Language:

english

File:

PDF, 73 KB

english, 2004

32

GenomeGraphs: integrated genomic data visualization with R

Steffen Durinck, James Bullard, Paul T Spellman, Sandrine Dudoit

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 995 KB

english, 2009

33

Prediction of epigenetically regulated genes in breast cancer cell lines

Leandro A Loss, Anguraj Sadanandam, Steffen Durinck, Shivani Nautiyal, Diane Flaucher, Victoria EH Carlton, Martin Moorhead, Yontao Lu, Joe W Gray, Malek Faham, Paul Spellman, Bahram Parvin

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 970 KB

english, 2010

34

A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB

Tim F Rayner, Philippe Rocca-Serra, Paul T Spellman, Helen C Causton, Anna Farne, Ele Holloway, Rafael A Irizarry, Junmin Liu, Donald S Maier, Michael Miller, Kjell Petersen, John Quackenbush, Gavin S

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 1.37 MB

english, 2006

35

Ovarian carcinomas with genetic and epigenetic BRCA1 loss have distinct molecular abnormalities

Joshua Z Press, Alessandro De Luca, Niki Boyd, Sean Young, Armelle Troussard, Yolanda Ridge, Pardeep Kaurah, Steve E Kalloger, Katherine A Blood, Margaret Smith, Paul T Spellman, Yuker Wang, Dianne M

Journal:

Year:

2008

Language:

english

File:

PDF, 972 KB

english, 2008

36

Intraopreative motor and somatosensory evoked potentials monitoring: a review of 116 cases

Keith Nagle, Ronald Emerson, David Adams, Eric Heyer, Edward Gallo, Kathrine Dowling, Paul McCormick, David Roye, John Pile-Spellman, Bennet Stein, Mark Weidenbaum

Journal:

Electroencephalography and Clinical Neurophysiology

Year:

1997

Language:

english

File:

PDF, 166 KB

english, 1997

37

Essential fatty acids in plasma phospholipids in schizophrenics

David F. Horrobin, Mehar S. Manku, Nancy Morse-Fisher, Krishna S. Vaddadi, Paul Courtney, A.Iain M. Glen, Evelyne Glen, M. Spellman, C. Bates

Journal:

Biological Psychiatry

Year:

1989

Language:

english

File:

PDF, 535 KB

english, 1989

38

The morphologies of breast cancer cell lines in three-dimensional assays correlate with their profiles of gene expression

Paraic A. Kenny, Genee Y. Lee, Connie A. Myers, Richard M. Neve, Jeremy R. Semeiks, Paul T. Spellman, Katrin Lorenz, Eva H. Lee, Mary Helen Barcellos-Hoff, Ole W. Petersen, Joe W. Gray, Mina J. Bissel

Journal:

Molecular Oncology

Year:

2007

Language:

english

File:

PDF, 4.07 MB

english, 2007

39

Genomic aberrations in normal tissue adjacent toHER2-amplified breast cancers: field cancerization or contaminating tumor cells?

Anguraj Sadanandam, Aseem Lal, Stephen C. Benz, Serenella Eppenberger-Castori, Gary Scott, Joe W. Gray, Paul Spellman, Fred Waldman, Christopher C. Benz

Journal:

Breast Cancer Research and Treatment

Year:

2012

Language:

english

File:

PDF, 1.61 MB

english, 2012

40

Integrating biological knowledge into variable selection: an empirical Bayes approach with an application in cancer biology

Steven M Hill, Richard M Neve, Nora Bayani, Wen-Lin Kuo, Safiyyah Ziyad, Paul T Spellman, Joe W Gray, Sach Mukherjee

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 578 KB

english, 2012

41

The Texas Rangers: Wearing the Cinco Peso, 1821-1900 (review)

Spellman, Paul N.

Journal:

Southwestern Historical Quarterly

Year:

2009

Language:

english

File:

PDF, 255 KB

english, 2009

42

FuGE: Functional Genomics Experiment Object Model

Jones, Andrew R., Pizarro, Angel, Spellman, Paul, Miller, Michael

Journal:

Omics A Journal of Integrative Biology

Year:

2006

Language:

english

File:

PDF, 149 KB

english, 2006

43

Phospholipid Scramblase 1, an interferon-regulated gene located at 3q23, is regulated by SnoN/SkiL in ovarian cancer cells

Karthik M Kodigepalli, Pavana Anur, Paul Spellman, Peter J Sims…

Journal:

Molecular Cancer

Year:

2013

Language:

english

File:

PDF, 393 KB

english, 2013

44

Design and implementation of microarray gene expression markup language (MAGE-ML)

Paul T Spellman, Michael Miller, Jason Stewart, Charles Troup…

Journal:

Year:

2002

Language:

english

File:

PDF, 99 KB

english, 2002

45

A robust prognostic signature for hormone-positive node-negative breast cancer

Griffith, Obi L, Pepin, François, Enache, Oana M, Heiser, Laura M, Collisson, Eric A, Spellman, Paul T, Gray, Joe W

Journal:

Genome Medicine

Year:

2013

Language:

english

File:

PDF, 1.92 MB

english, 2013

46

Detecting cancer by monitoring circulating tumor DNA

Spellman, Paul T, Gray, Joe W

Journal:

Nature Medicine

Year:

2014

Language:

english

File:

PDF, 243 KB

english, 2014

47

Extensive gene flow characterizes the phylogeography of a North American migrant bird: Black-headed Grosbeak (Pheucticus melanocephalus)

van Els, Paul, Spellman, Garth M., Smith, Brian Tilston, Klicka, John

Journal:

Molecular Phylogenetics and Evolution

Year:

2014

Language:

english

File:

PDF, 913 KB

english, 2014

48

Michael Farrellby John O'Regan;Carmel Mooneyby John O'Regan

Review by: Paul Spellman

Journal:

Irish Arts Review Yearbook

Year:

2000

Language:

english

File:

PDF, 611 KB

english, 2000

49

A Diary of the Art Year in Ireland

Elizabeth Mayes, Margarita Cappock, Brendan Rooney and Paul Spellman

Journal:

Irish Arts Review Yearbook

Year:

1998

Language:

english

File:

PDF, 9.04 MB

english, 1998

50

Recollections of Roderic O'Conor an Interview with His Grandniece

Paul Spellman and Sister Theophane

Journal:

Irish Arts Review Yearbook

Year:

1998

Language:

english

File:

PDF, 3.87 MB

english, 1998